| Division One | |||
| 02/09/2006 | Lepton Highlanders | 0 - 1 | Shepley |
| 09/09/2006 | Shepley | 1 - 5 | Newsome WMC |
| 16/09/2006 | New Mill 94 | 1 - 0 | Shepley |
| 23/09/2006 | Shepley | 3 - 4 | Heywood Sports |
| 30/09/2006 | Uppermill | 1 - 2 | Shepley |
| 07/10/2006 | Shepley | 2 - 2 | New Mill 94 |
| 14/10/2006 | Newsome WMC | 0 - 2 | Shepley |
| FA Challenge Cup Round One | |||
| 21/10/2006 | Linthwaite Athletic | 0 - 6 | Shepley |
| 04/11/2006 | Wooldale Wanderers | 3 - 2 | Shepley |
| Sheffield Junior Challenge Cup Round Two | |||
| 11/11/2006 | Shepley | 2 - 0 | The Acorn |
| FA Challenge Cup Round Two | |||
| 18/11/2006 | Lindley | 0 - 2 | Shepley |
| 02/12/2006 | Shepley | 2 - 2 | Aimbry |
| Sheffield Junior Challenge Cup Round Three | |||
| 09/12/2006 | Shepley | 0 - 0 | Bradway 35s |
| FA Challenge Cup Round Three | |||
| 16/12/2006 | Shepley | 3 - 1 | Honley |
| 23/12/2006 | Shepley | 0 - 0 | Lepton Highlanders |
| Sheffield Junior Challenge Cup Round Four | |||
| 27/01/2007 | Hepworth Utd | 3 - 1 | Shepley |
| 03/02/2007 | Shepley | 0 - 1 | Meltham Athletic |
| Barlow Cup Round One | |||
| 17/02/2007 | Britannia Sports | 1 - 0 | Shepley |
| 24/02/2007 | Honley | 3 - 1 | Shepley |
| 03/03/2007 | Shepley | 4 - 2 | Wooldale Wanderers |
| 10/03/2007 | Sovereign Sports | 1 - 1 | Shepley |
| FA Challenge Cup Round Four Quarter Final | |||
| 17/03/2007 | Shepley | 2 - 1 | Wooldale Wanderers |
| 24/03/2007 | Heywood Sports | 3 - 2 | Shepley |
| 07/04/2007 | Aimbry | 1 - 2 | Shepley |
| 12/04/2007 | Meltham Athletic | 1 - 1 | Shepley |
| 14/04/2007 | Shepley | 0 - 2 | Sovereign Sports |
| 17/04/2007 | Shepley | 4 - 1 | Uppermill |
| FA Challenge Cup Semi Final | |||
| 21/04/2007 | Newsome WMC | 1 - 2 | Shepley |
| 24/04/2007 | Diggle | 2 - 2 | Shepley |
| 28/04/2007 | Shepley | 1 - 2 | Honley |
| 05/05/2007 | Shepley | 0 - 6 | Diggle |
| FA Challenge Cup Final | |||
| 09/05/2007 | Match 1 | 5 - 0 | Shepley |