| Reserve Division Three | |||
| 25/08/1999 | Holmbridge | 0 - 0 | Flockton FC |
| 01/09/1999 | Flockton FC | 3 - 2 | Mount |
| 04/09/1999 | Flockton FC | 0 - 4 | Cumberworth |
| 11/09/1999 | Upperthong SC | 5 - 0 | Flockton FC |
| FA Junior Cup Round One | |||
| 18/09/1999 | Flockton FC | 2 - 3 | Weavers |
| 25/09/1999 | Cartworth Moor | 9 - 1 | Flockton FC |
| 02/10/1999 | Flockton FC | 0 - 4 | Netherthong |
| 09/10/1999 | Flockton FC | 7 - 2 | Little John |
| 16/10/1999 | Netherthong | 7 - 2 | Flockton FC |
| 23/10/1999 | Flockton FC | 3 - 0 | Weavers |
| 30/10/1999 | Flockton FC | 2 - 1 | Holmbridge |
| 06/11/1999 | Lepton Highlanders | 2 - 4 | Flockton FC |
| 20/11/1999 | Linthwaite Athletic | 1 - 1 | Flockton FC |
| 27/11/1999 | Flockton FC | 4 - 1 | Meltham Athletic |
| 18/12/1999 | Flockton FC | 1 - 1 | Linthwaite Athletic |
| Gee Cup Round Two | |||
| 08/01/2000 | Flockton FC | 2 - 1 | Moldgreen |
| 15/01/2000 | Lindley | 1 - 1 | Flockton FC |
| 22/01/2000 | Flockton FC | 2 - 4 | Lindley |
| 05/02/2000 | Meltham Athletic | 1 - 1 | Flockton FC |
| Gee Cup Round Three Quarter Final | |||
| 12/02/2000 | Flockton FC | 2 - 3 | Scissett 'A' |
| 19/02/2000 | Little John | 2 - 5 | Flockton FC |
| 26/02/2000 | Flockton FC | 1 - 1 | Cartworth Moor |
| 04/03/2000 | Weavers | 4 - 1 | Flockton FC |
| 18/03/2000 | Mount | 2 - 2 | Flockton FC |
| 25/03/2000 | Cumberworth | 3 - 1 | Flockton FC |
| 01/04/2000 | Flockton FC | 4 - 5 | Lepton Highlanders |
| 15/04/2000 | Flockton FC | 1 - 3 | Upperthong SC |